Pytorch implementation of the Harmony batch correction method
Cloud-based serverless scRNA-seq data visualizer
Cloud-based single-cell and single-nucleus RNA-seq data analysis framework
Python analysis module of Cumulus, functionally comparable to Seurat and SCANPY
A principled and unified probabilistic framework for analyzing sequencing-based 'toeprinting' assays
A de novo transcriptome assembly evaluation package, which contains two components, RSEM-EVAL and REF-EVAL. Bo developed the RSEM-EVAL component.
As one of the first ChIP-Seq multi-mapping read allocators, CSEM allows multi-reads to be utilized by peak callers.
RSEM is a widely-used RNA-Seq transcript quantification tool. RSEM papers are cited over 5,300 times.